Installation¶
bioconda¶
conda install mirtop -c bioconda
pypi¶
pip install mirtop
update to develop version from pip¶
pip install --upgrade --no-deps git+https://github.com/miRTop/mirtop.git#egg=mirtop
install develop version¶
Thes best solution is to install conda to get an independent enviroment.
wget http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh
bash Miniconda-latest-Linux-x86_64.sh -b -p ~/mirtop_env
export PATH=$PATH:~/mirtop_env
conda install -c bioconda bioconda bedtools samtools pip nose pysam pandas dateutil pyyaml pybedtools biopython setuptools
git clone http://github.com/miRTop/mirtop
cd mirtop
git fetch origin dev
git checkout dev
python setup.py develop